Healthy Greek yogurt blueberry muffins became a morning favorite for me during a stretch when I was trying to clean up my breakfasts without giving up the joy of baked goods. I had a big container of Greek yogurt in the fridge and some sweet blueberries that were about to turn so I whipped up a batch and was hooked from the very first bite.

What I love about these muffins is how perfectly balanced they are—moist from the yogurt lightly sweetened and packed with bursts of fresh blueberry flavor. They feel like a treat but keep me feeling good all morning long especially with a hot cup of coffee on the side.
Ingredients
Here’s what I use for this recipe. You can always make substitutions if you prefer!
- Whole wheat flour – Adds a bit of nuttiness and fiber for a wholesome base.
- Baking powder – Helps the muffins rise to fluffy perfection.
- Baking soda – Reacts with the yogurt for an extra lift.
- Greek yogurt – Makes the muffins super moist while adding protein.
- Eggs – Provide structure and richness.
- Honey or maple syrup – Natural sweeteners that keep things healthier.
- Coconut oil or olive oil – Adds moisture and a light texture.
- Vanilla extract – Rounds out the flavor with warmth.
- Fresh blueberries – The star ingredient bursting with flavor in every bite.
- Rolled oats – Optional but great for texture and a hearty look on top.
- Salt – Enhances all the other flavors.
- Tools You’ll Need
- Mixing bowls – One for dry ingredients and one for the wet mixture.
- Whisk and spatula – For blending the batter gently without overmixing.
- Muffin tin – To bake the muffins in perfect individual portions.
- Paper liners or non-stick spray – Keeps the muffins from sticking.
- Measuring cups and spoons – Helps keep everything balanced and precise.

Instructions
Step 1: Prep the Oven and Pan
I start by preheating the oven to 350°F and lining a muffin tin with paper liners or lightly greasing each cup.
Step 2: Mix Dry Ingredients
In a large bowl I whisk together the whole wheat flour baking powder baking soda salt and oats if using. I like to toss the blueberries in a spoonful of the flour mix to help keep them from sinking.
Step 3: Mix Wet Ingredients
In another bowl I whisk the Greek yogurt eggs honey melted coconut oil and vanilla extract until smooth and creamy.
Step 4: Combine and Fold
I gently stir the wet ingredients into the dry until just combined then fold in the blueberries carefully to keep them whole.
Step 5: Fill the Muffin Tin
I divide the batter evenly among the muffin cups filling each about 3/4 full. I like to sprinkle a few oats and extra blueberries on top for that bakery-style finish.
Step 6: Bake
I bake the muffins for 18–22 minutes or until a toothpick inserted in the center comes out clean. Then I let them cool in the pan for a few minutes before transferring to a rack.
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You can swap the blueberries for raspberries or chopped strawberries depending on what’s in season. If you like a sweeter muffin add a tablespoon of brown sugar to the batter. I also sometimes add lemon zest for a citrusy boost that pairs beautifully with blueberries.
Ways to Serve
These muffins are perfect as a grab-and-go breakfast or paired with yogurt and fruit for a fuller meal. They also make a lovely snack or lunchbox treat and freeze beautifully—just reheat in the microwave for a warm morning bite.
Frequently Asked Questions
Can I make healthy Greek yogurt blueberry muffins gluten-free?
Yes just use a 1:1 gluten-free flour blend and make sure your oats are certified gluten-free.
How long do these muffins stay fresh?
They’re best eaten within 3 days at room temperature but can be stored in the fridge for up to a week or frozen for longer.
Can I use frozen blueberries?
Absolutely just use them straight from the freezer and fold them in gently to avoid streaking the batter.
See You in the Kitchen
I hope you give these healthy Greek yogurt blueberry muffins a try! They’re one of my favorite ways to start the day and I’d love to hear how they turn out for you. Share your favorite add-ins or let me know if you freeze a batch for busy mornings!
Happy Cooking!
Print
Healthy Greek Yogurt Blueberry Muffins
- Total Time: 30 minutes
- Yield: 12 muffins
- Diet: Vegetarian
Description
Looking for the best healthy muffin ideas? These Greek yogurt blueberry muffins are quick, easy, and full of goodness! Naturally sweetened and moist, they’re the perfect option for a simple breakfast, healthy snack, or meal prep treat. You’ll love this easy recipe!
Ingredients
- 1 1/2 cups whole wheat flour
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/4 tsp salt
- 1/2 cup rolled oats (optional)
- 2 eggs
- 1 cup plain Greek yogurt
- 1/3 cup honey or maple syrup
- 1/4 cup melted coconut oil
- 1 tsp vanilla extract
- 1 cup fresh blueberries
Instructions
- Preheat oven to 350°F and line a muffin tin with paper liners or grease well.
- In a large bowl, whisk flour, baking powder, baking soda, salt, and oats if using.
- In another bowl, whisk Greek yogurt, eggs, honey, coconut oil, and vanilla until smooth.
- Combine wet and dry ingredients and stir until just mixed. Fold in blueberries.
- Divide batter into muffin cups and top with extra oats or blueberries if desired.
- Bake for 18–22 minutes or until a toothpick comes out clean. Cool before serving.
Notes
- Use frozen blueberries if fresh aren’t available (no need to thaw).
- Add lemon zest for a bright citrus flavor boost.
- Store in the fridge up to 1 week or freeze for longer storage.
- Make it dairy-free with plant-based yogurt alternatives.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American